Session Info

Information about the computing environment is important for reproducibility. A summary of the computing environment is saved to session_info.csv that can be viewed and downloaded from https://github.com/NewGraphEnvironment/neexdzii_kwa_benthic_2025/tree/main/data/session_info.csv.

si <- sessionInfo()
print(si)
## R version 4.5.3 (2026-03-11)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=C.UTF-8       LC_NUMERIC=C           LC_TIME=C.UTF-8       
##  [4] LC_COLLATE=C.UTF-8     LC_MONETARY=C.UTF-8    LC_MESSAGES=C.UTF-8   
##  [7] LC_PAPER=C.UTF-8       LC_NAME=C              LC_ADDRESS=C          
## [10] LC_TELEPHONE=C         LC_MEASUREMENT=C.UTF-8 LC_IDENTIFICATION=C   
## 
## time zone: UTC
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] RVAideMemoire_0.9-83-12 taxize_0.10.1           indicspecies_1.8.0     
##  [4] vegan_2.7-3             permute_0.9-10          janitor_2.2.1          
##  [7] readxl_1.4.5            lubridate_1.9.5         forcats_1.0.1          
## [10] dplyr_1.2.1             purrr_1.2.2             readr_2.2.0            
## [13] tidyr_1.3.2             tibble_3.3.1            ggplot2_4.0.2          
## [16] tidyverse_2.0.0         sf_1.1-0                leaflet_2.2.3          
## [19] kableExtra_1.4.0        stringr_1.6.0           fs_2.1.0               
## [22] glue_1.8.1              htmlwidgets_1.6.4       DT_0.34.0              
## [25] desc_1.4.3              rmarkdown_2.31          knitr_1.51             
## [28] bookdown_0.46          
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_1.2.1        viridisLite_0.4.3       farver_2.1.2           
##  [4] S7_0.2.1-1              fastmap_1.2.0           digest_0.6.39          
##  [7] timechange_0.4.0        lifecycle_1.0.5         cluster_2.1.8.2        
## [10] magrittr_2.0.5          compiler_4.5.3          rlang_1.2.0            
## [13] sass_0.4.10             tools_4.5.3             yaml_2.3.12            
## [16] data.table_1.18.2.1     labeling_0.4.3          bit_4.6.0              
## [19] classInt_0.4-11         curl_7.0.0              xml2_1.5.2             
## [22] RColorBrewer_1.1-3      KernSmooth_2.23-26      httpcode_0.3.0         
## [25] withr_3.0.2             grid_4.5.3              e1071_1.7-17           
## [28] scales_1.4.0            MASS_7.3-65             crul_1.6.0             
## [31] cli_3.6.6               crayon_1.5.3            generics_0.1.4         
## [34] otel_0.2.0              rstudioapi_0.18.0       tzdb_0.5.0             
## [37] DBI_1.3.0               ape_5.8-1               cachem_1.1.0           
## [40] proxy_0.4-29            splines_4.5.3           parallel_4.5.3         
## [43] cellranger_1.1.0        vctrs_0.7.3             Matrix_1.7-4           
## [46] jsonlite_2.0.0          hms_1.1.4               bit64_4.8.0            
## [49] systemfonts_1.3.2       crosstalk_1.2.2         jquerylib_0.1.4        
## [52] units_1.0-1             pak_0.9.4               leaflet.providers_3.0.0
## [55] stringi_1.8.7           gtable_0.3.6            pillar_1.11.1          
## [58] htmltools_0.5.9         R6_2.6.1                textshaping_1.0.5      
## [61] vroom_1.7.1             evaluate_1.0.5          lattice_0.22-9         
## [64] snakecase_0.11.1        bslib_0.10.0            class_7.3-23           
## [67] Rcpp_1.1.1-1            svglite_2.2.2           nlme_3.1-168           
## [70] mgcv_1.9-4              xfun_0.57               pkgconfig_2.0.3        
## [73] zoo_1.8-15
if (params$gitbook_on) {
  pkgs <- installed.packages()[names(si$otherPkgs), c("Package", "Version")]
  write.csv(pkgs, "data/session_info.csv", row.names = FALSE)
}